Southern blotting is used for finding specific DNA sequence from a DNA sample by using the combination of techniques like gel electrophoresis, capillary electrophoresis and hybridization. The DNA from the gel (after gel electrophoresis)is transferred to a nitrocellulose membrane and hybridization analysis is done for finding out the sequence of our interest using a probe) Let us discuss here the steps involved in doing Southern blotting. The steps are 1) Preparation of Sample 2) Restriction of the Sample 3) Gel Electrophoresis 4) Pre-treatment of the gel 5) Blotting 6) Hybridization 1) Preparation of Sample: (plant/animal/bacterial) For tissue or blood samples the DNA could be obtained by treating with SDS (Sodium dodecyl Sulphate) If we are going to have the DNA from a bacterial sample, there are separate protocols for extracting genomic DNA and pDNA . For extracting DNA from plants, CTAB (cetyltrimethyl ammonium bromide) is used. This CTAB binds with the DNA and h...
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