Hi, Agarose gel electrophoresis In the previous post I explained how to quantify DNA, and now we can find the molecular weight of that extracted DNA. But, how? Simple, you need to run an agarose gel! Preparation of agarose gel: Agarose gel must be prepared based on the DNA we are going to run. For example: if you are going to run Genomic DNA, you must use 0.6%gel, for plasmid DNA, you must use 0.8% gel, for PCR(Polymerase chain reaction) sample, you must use 1.2% gel. You may ask, why three different % of gels? The answer for your question is: Genomic DNA will be bulkier than pDNA - so, we must use a gel with less percentage, so that the pore size will be greater and the genomic DNA can move easily. In case of PCR sample, the gene amplified won't be bulky, so, it moves fast, very fast in low percent gel, that's why to have an optimum speed we use a higher percentage of gel comparatively. And, when our aim is to separate two sequences with relatively equal size...
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